AI and Bioinformatics Benchmarking Database Search Engines for DDA-based Immunopeptidomics Abstract #122 Posted on24 March 202511 June 2025 Updated on11 June 2025 0h36
AI and Bioinformatics Enhancing Peptide-Spectrum Match Identification with Nonlinear Models in Mokapot: Assessing Complexity, Overfitting, and False Discovery Rates Abstract #121 Posted on24 March 202512 May 2025 Updated on12 May 2025 13h16
AI and Bioinformatics Global Spectrum Interpretation (GSI): A global, integrative approach for the protein inference problem Abstract #108 Posted on20 March 202512 May 2025 Updated on12 May 2025 13h19
AI and Bioinformatics Fragment Explorer: Browsing MS runs for internal ions Abstract #103 Posted on18 March 202511 June 2025 Updated on11 June 2025 0h28
AI and Bioinformatics Classification of Collagens via peptide ambiguation, in a paleoproteomic LC-MS/MS-based taxonomic pipeline Abstract #96 Posted on13 March 202511 June 2025 Updated on11 June 2025 0h31
AI and Bioinformatics Challenges and Opportunities in Modification Searches for DIA Proteomics Abstract #87 Posted on10 March 20259 May 2025 Updated on9 May 2025 20h21
AI and Bioinformatics A living proteomics benchmark for comprehensive evaluation of deep learning-based de novo peptide sequencing tools Abstract #22 Posted on15 February 20259 May 2025 Updated on9 May 2025 19h27
AI and Bioinformatics Zero-shot retention time prediction for unseen post-translational modifications with molecular structure encodings Abstract #10 Posted on12 February 20259 May 2025 Updated on9 May 2025 14h09
